BtaEX6009222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004555 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:27067615-27070485:+
Coord C1 exon
chr2:27067615-27067734
Coord A exon
chr2:27069422-27069512
Coord C2 exon
chr2:27070418-27070485
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGACTTCCTCCTTCTGCAGCCA
3' ss Score
9.25
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGCCCAATCGCTGTAAGGATGTCTGCAGCCACTTATGCCTTCTGAGACCTAAGGGATACACCTGCGCCTGTCCCCAAGGCTCCAGATTTCTAGAAGGGAGCGTCACAGTGTGTGATGCAG
Seq A exon
CCATTGTAGGTGCTGTCAGCATGCCCCCTCCATGCAGGTGTATGAACAGAGGAAGCTGCTATTTTGATGAGAATAACCTCCCCAAATGCAA
Seq C2 exon
GTGTTCTAGTGGCTACGTGGGAGAATATTGTGAAATGGGGCTTTCCCAAGGCGTTCCTCCAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004555-'94-80,'94-79,98-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=82.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAATCGCTGTAAGGATGT
R:
AGGAACGCCTTGGGAAAGC
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]