GgaEX6042434 @ galGal4
Exon Skipping
Gene
ENSGALG00000010858 | LRP2
Description
low density lipoprotein receptor-related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr7:18331737-18333672:+
Coord C1 exon
chr7:18331737-18331856
Coord A exon
chr7:18332996-18333086
Coord C2 exon
chr7:18333605-18333672
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTCAATTTTTGCAGCTA
3' ss Score
8.79
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGCCTAACCCTTGTAAAGATGTCTGCAGCCACCTCTGCTTGTTGAGACCGGGAGGATACACCTGTGCTTGTCCTCAAGGGACTCGGTTTGTTGAAGGCAGCAGCACAGAGTGTGATGCAG
Seq A exon
CTATTGAATCCCCTCCCACAATGCCACCAGCATGCAGGTGCATGTATGGAGGAACGTGCTATATAGATGAAAGTGGTCTTCCAAAATGCAA
Seq C2 exon
ATGCTCTTATGGCTACACTGGAGATTATTGTGAAATAGGATTGTCAAAGGGAGTGCCTCCTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010858-'87-96,'87-94,89-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=87.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAGATGTCTGCAGCCACC
R:
AGGCACTCCCTTTGACAATCC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]