DreEX0043744 @ danRer10
Exon Skipping
Gene
ENSDARG00000102506 | lrp2a
Description
low density lipoprotein receptor-related protein 2a [Source:ZFIN;Acc:ZDB-GENE-050119-2]
Coordinates
chr9:48960411-48963890:+
Coord C1 exon
chr9:48960411-48960530
Coord A exon
chr9:48962763-48962853
Coord C2 exon
chr9:48963823-48963890
Length
91 bp
Sequences
Splice sites
3' ss Seq
GACCATCCGCTGCACCGCAGCCA
3' ss Score
4.49
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TGATGAACCCATGTCAGGACGCCTGCAGTCACCTGTGCCTCCTGCGTCCGGGTGGATTCACCTGTGCCTGTCCGCAGGGATCAACACTGCTCACCTTCAACAAAAACCAGTGCGACGCCG
Seq A exon
CCATTGAGGCCGAGGTGTCCATGCCGCTTGCATGCAGATGCATGAATGGAGGAACGTGCTTCACTGATGAAGGAGGCCTGCCCAAGTGCAA
Seq C2 exon
GTGTCCGTACGGTTACTCTGGTAGTTACTGTGAAATGGGCAAGTCTAGAGGAGCTCCCGCTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102506_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=87.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACCCATGTCAGGACGC
R:
GAGCTCCTCTAGACTTGCCCA
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]