RnoEX0050713 @ rn6
Exon Skipping
Gene
ENSRNOG00000056184 | Lrp2
Description
LDL receptor related protein 2 [Source:RGD Symbol;Acc:68407]
Coordinates
chr3:55671705-55674544:-
Coord C1 exon
chr3:55674425-55674544
Coord A exon
chr3:55672494-55672584
Coord C2 exon
chr3:55671705-55671772
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTTTCCTTTCTGCAGCCA
3' ss Score
8.9
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGTCCAACCCTTGCAAGCAGGTCTGTAGTCACCTCTGCCTGCTGAGACCAGGAGGCTACAGCTGTGCCTGTCCCCAAGGCTCCGACTTCGTAACTGGCAGCACTGTCCAGTGTGATGCAG
Seq A exon
CCAGTGAACTTCCCGTCACCATGCCTCCCCCATGCAGGTGCATGCACGGAGGAAATTGCTATTTTGATGAGAATGAACTCCCCAAATGCAA
Seq C2 exon
GTGTTCCAGTGGCTATAGCGGAGAATACTGTGAGGTTGGGCTCTCGAGAGGCATCCCTCCAGGGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056184-'88-99,'88-98,89-99
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=75.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGCAAGCAGGTCTGTAG
R:
GGAGGGATGCCTCTCGAGAG
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]