HsaEX0036424 @ hg38
Exon Skipping
Gene
ENSG00000081479 | LRP2
Description
LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
Coordinates
chr2:169139543-169142793:-
Coord C1 exon
chr2:169142674-169142793
Coord A exon
chr2:169140455-169140545
Coord C2 exon
chr2:169139543-169139610
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTTCCCTTCCTGCAGCCA
3' ss Score
10.04
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGCCCAACCTTTGCAAACAGATCTGCAGCCACCTCTGCCTTCTGAGACCTGGAGGATACAGCTGTGCCTGTCCCCAAGGCTCCAGCTTTATAGAGGGGAGCACCACTGAGTGTGATGCAG
Seq A exon
CCATCGAACTGCCTATCAACCTGCCCCCCCCATGCAGGTGCATGCACGGAGGAAATTGCTATTTTGATGAGACTGACCTCCCCAAATGCAA
Seq C2 exon
GTGTCCTAGCGGCTACACCGGAAAATATTGTGAAATGGCGTTTTCAAAAGGCATCTCTCCAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081479_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000263816fB19039
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAAACAGATCTGCAGCCA
R:
GAGATGCCTTTTGAAAACGCCA
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development