MmuEX6101948 @ mm10
Exon Skipping
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69432183-69435122:-
Coord C1 exon
chr2:69435003-69435122
Coord A exon
chr2:69433002-69433092
Coord C2 exon
chr2:69432183-69432250
Length
91 bp
Sequences
Splice sites
3' ss Seq
ATGGCTTTTCCTTTCTGCAGCCA
3' ss Score
8.9
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGTCCAACCCTTGCAAGCAGGTCTGTAGCCACCTCTGCCTGCTGAGACCAGGAGGCTACAGCTGTGCCTGTCCCCAAGGCTCCGACTTCGTAACTGGCAGCACCGTTGAGTGTGATGCAG
Seq A exon
CCAGTGAACTCCCCATCACCATGCCTTCCCCATGCAGGTGCATGCACGGAGGAAGTTGCTATTTTGATGAGAATGACCTCCCCAAATGCAA
Seq C2 exon
GTGTTCTAGCGGCTACAGTGGAGAGTACTGTGAGATTGGGCTCTCGAGAGGCATCCCTCCAGGGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070-'88-89,'88-86,90-89
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=75.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGCAAGCAGGTCTGTAG
R:
ATGCCTCTCGAGAGCCCAATC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types