Special

BtaEX6009312 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus ceramide synthase 6 (CERS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001193132]
Coordinates
chr2:27486819-27550959:-
Coord C1 exon
chr2:27550902-27550959
Coord A exon
chr2:27489267-27489317
Coord C2 exon
chr2:27486819-27486911
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCATGTTTTTCAGACG
3' ss Score
10.09
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGAAATTTTCATATGGCCTTTATATATTTACCTATGGAATCCGGTTCCTGAAAAAG
Seq A exon
ACGCCCTGGCTGTGGAATACAAAGCATTGCTGGTACAACTACCCCTATCAG
Seq C2 exon
CCACTCACACCTGACCTTCACTACTATTATATCCTGGAGCTGTCGTTTTATTGGTCTTTAATGTTTTCCCAGTTCACTGATATCAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044179-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]