Special

GgaEX0016318 @ galGal3

Exon Skipping

Gene
ENSGALG00000010902 | E1C4X9_CHICK
Description
NA
Coordinates
chr7:20440268-20465000:-
Coord C1 exon
chr7:20464943-20465000
Coord A exon
chr7:20442445-20442495
Coord C2 exon
chr7:20440268-20440360
Length
51 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCTTTCTCTCTCAGACA
3' ss Score
10.18
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGGAGATTTACATTTTACCTTTATATATTTACCTATGGAGTACGGTTCCTGAAAAAG
Seq A exon
ACACCCTGGCTTTGGAATACCAGACAGTGCTGGAATGGTTACCCATATCAG
Seq C2 exon
CCACTGATGCCTGACCTTCATTATTACTACATTGCTGAATTATCATTCTACTGGTCCTTAATGTTTTCTCAATTCATTGACATCAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTACCTATGGAGTACGGTTCCTG
R:
ATGAATTGAGAAAACATTAAGGACCA
Band lengths:
108-159
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]