HsaEX0035453 @ hg19
Exon Skipping
Gene
ENSG00000172292 | LASS6
Description
ceramide synthase 6 [Source:HGNC Symbol;Acc:23826]
Coordinates
chr2:169487495-169571639:+
Coord C1 exon
chr2:169487495-169487552
Coord A exon
chr2:169547544-169547594
Coord C2 exon
chr2:169571511-169571639
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTCATTTTTTTCAGACC
3' ss Score
10.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGAGATTTTCATTTTACCTTTATGTATTTACCTACGGAGTCAGATTCCTGAAAAAG
Seq A exon
ACCCCCTGGTTGTGGAATACGAGGCATTGCTGGTACAACTACCCCTATCAG
Seq C2 exon
GACTTTGGCATTATGTTCCTGCACCACCTTGTATCTATTTTCTTGATTACCTTTTCATATGTCAACAATATGGCCCGAGTAGGAACGCTGGTCCTTTGTCTTCATGATTCAGCTGATGCTCTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172292_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF078567=Orai-1=FE(24.7=100),PF0043216=Prenyltrans=PU(31.6=30.0)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTACGGAGTCAGATTCCTGA
R:
ATGAAGACAAAGGACCAGCGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)