MmuEX0026174 @ mm10
Exon Skipping
Gene
ENSMUSG00000027035 | Cers6
Description
ceramide synthase 6 [Source:MGI Symbol;Acc:MGI:2442564]
Coordinates
chr2:69002747-69068757:+
Coord C1 exon
chr2:69002747-69002804
Coord A exon
chr2:69047145-69047195
Coord C2 exon
chr2:69068629-69068757
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATTTTTTTCCAGACC
3' ss Score
9.84
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGAGATTTTCCTTTTACCTCTATGTATTTAGCTACGGAGTCCGGTTCTTGAAACAG
Seq A exon
ACCCCTTGGTTGTGGAATACAAGACACTGCTGGTATAACTACCCTTACCAG
Seq C2 exon
GACTTCGGCATTATGTTCCTGCACCACCTTGCAACAATTTTCTTAATAACCTTTTCATATGTCAACAACATGGCCCGAGTAGGAACCCTGGTCCTCTGTCTTCACGACTCAGCCGATGCTCTGCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027035_MULTIEX1-1/4=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTCCGGTTCTTGAAACA
R:
GCATCGGCTGAGTCGTGAAG
Band lengths:
141-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types