MmuEX0026174 @ mm9
Exon Skipping
Gene
ENSMUSG00000027035 | Lass6
Description
LAG1 homolog, ceramide synthase 6 [Source:MGI Symbol;Acc:MGI:2442564]
Coordinates
chr2:68840804-68888929:+
Coord C1 exon
chr2:68840804-68840861
Coord A exon
chr2:68885202-68885252
Coord C2 exon
chr2:68888837-68888929
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTATTTTTTTCCAGACC
3' ss Score
9.84
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGGAGATTTTCCTTTTACCTCTATGTATTTAGCTACGGAGTCCGGTTCTTGAAACAG
Seq A exon
ACCCCTTGGTTGTGGAATACAAGACACTGCTGGTATAACTACCCTTACCAG
Seq C2 exon
CCACTCACAGCTGACCTTCACTACTATTACATCCTGGAGCTGTCATTTTATTGGTCTTTAATGGTTTCCCAGTTCACAGATATCAAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027035-'7-6,'7-5,9-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTATGTATTTAGCTACGGAGTCC
R:
TTCCTTTTGATATCTGTGAACTGGGA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: