BtaEX6009322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019137 | SCN7A
Description
sodium channel, voltage gated, type VII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10594]
Coordinates
chr2:29989918-29994583:+
Coord C1 exon
chr2:29989918-29990022
Coord A exon
chr2:29990336-29990606
Coord C2 exon
chr2:29993511-29994583
Length
271 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCCTTTATACACAGAAC
3' ss Score
8.41
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAGGGAGGCTCAAATATCTTTATAACAGTGAAACAGAAGAAACAGTATCGTGCACTGAAGAAGCTGATGTATGAAGACTCTCAACAACCAGTACCTCTCCCAGAA
Seq A exon
AACAAGTTCCAACGATTCATCTTTGACTTGGTAACAAGTCGAGTTTTTAATATCATCATTATGACTCTTATATGTTTCCAAGCAATAACCATTATGATACAAAGTGATGAACAGAGCCCAAAAATCAACACTGCTCTGTTTTGGATTAACTCAGTTTATGTTATGCTATATATTGGAGAATGTGTACTAAAGCTCATCGTTTTCCATTGTAACTATTTCACCAGTGGATGGAACATTTTTGACTTCATGGTGGTTGTTTTCTCTATTACAG
Seq C2 exon
ACCAAGGACTATTTCTGCCTCTGATGGTAGGATATTACCTTGTATCTCCTTCCCTTGTGCAACTGATACTTCTCTCACGGATCATCCACATTCTGCATCCTGAGAAAGGACTAAAGTTGTTCCATAATCTGCTGCTTCCTTTGATGCTGTCCCTCCCCGCCTTGTTGAACATCAGTCTTCTCATCTTCCTGATTATGTTTATCTACGCCATCTTCGGAATGTACAATTTTGCCTATGTTAAAAAGGAAGCTGGAATTGACGATATGTCCAACTTTGAAACCTTTAGCAGCAGTATGCTCTGTCTTTTCCGAGTTACAATATTTGCTGGTTGGGATGGGATGCTCAATGCAGTTTTCAATAGTAAATGGTCTGACTGTGATCCTAATAAAATTAACCCTGGGACTCAGGTTAGAGGAGATTGTGGCAATCCCTTTCTTGGGATTATTTATTTTGTCAGTTACATCCTCTTAACTAGGCTGATCATTGTAAACATGTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019137-'27-29,'27-28,28-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.2=47.3)
C2:
PF0052026=Ion_trans=PD(79.3=47.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGAAACAGTATCGTGCACT
R:
TGTACATTCCGAAGATGGCGT
Band lengths:
298-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]