DreEX6067601 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4855988-4858535:+
Coord C1 exon
chr12:4855988-4856092
Coord A exon
chr12:4856175-4856445
Coord C2 exon
chr12:4857163-4858535
Length
271 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTCTTCTCCAAACAGAAT
3' ss Score
10.63
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTTGGAGGGAAAGACATTTTCATGACTGAGGAACAGAAAAAGTATTACAATGCCATGAAGAAGCTGGGTGCAAAGAAACGTCCAAAACCTATACCTCGACCATCA
Seq A exon
AATATTATCCAGGGTTTGGTGTTTGACTTCATATCAAAACAGTTCTTTGACATTTTTATCATGGTGCTAATCTGCCTCAACATGGTGACCATGATGATAGAGACGGATGACCAGAGTGCTGAGAAAGAATATGTCCTGTACCAGATCAATCTGGTCTTCATCGTCGTCTTCACAAGTGAATGTGTACTTAAATTATTTGCACTCAGACAGTACTTTTTCACTATTGGCTGGAACGTCTTTGATTTTGTTGTAGTCATCCTTTCTATTGCAG
Seq C2 exon
GTCTAATGTTATCAGACATCATTGAGAAGTACTTTGTGTCTCCTACTTTGTTTCGTGTCATCAGACTTGCAAGAATCGGCCGTGTGCTGCGTCTCATCAGAGGGGCGAAGGGCATTCGGACCCTTTTGTTTGCCTTGATGATGTCACTTCCTGCCCTTTTCAACATTGGACTGCTTCTGTTCCTGATCATGTTCATCTTCTCCATCTTTGGCATGTCTAACTTTGCCTATGTGAAAAAGCAGGCAGGCATCGATGACATCTTCAACTTTGAAACATTTGGTGGCAGCATTATCTGCCTGTTTGAGATCACAACCTCGGCAGGCTGGGACGGCCTTCTGCTGCCTATTCTAAACAGTGGCCCTCCTGATTGTGACCCTGACTTTGAAAACCCTGGTACAGATGTGCGGGGAAACTGCGGGAATCCTGGCATGGGCATCATGTTTTTCTGCAGTTACATCATCATGTCATTCCTGGTGGTCGTGAACATGTACATCGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=38.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTGCAAAGAAACGTCCAA
R:
AAGATGTCATCGATGCCTGCC
Band lengths:
303-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]