MmuEX6090581 @ mm9
Exon Skipping
Gene
ENSMUSG00000001027 | Scn4a
Description
sodium channel, voltage-gated, type IV, alpha [Source:MGI Symbol;Acc:MGI:98250]
Coordinates
chr11:106179906-106184206:-
Coord C1 exon
chr11:106184102-106184206
Coord A exon
chr11:106183222-106183492
Coord C2 exon
chr11:106179906-106182233
Length
271 bp
Sequences
Splice sites
3' ss Seq
CATGTTCCGTGTCACTGCAGAAC
3' ss Score
9.36
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTTGGAGGGAAAGACATCTTCATGACAGAGGAACAGAAGAAATACTACAATGCGATGAAGAAGCTTGGCTCCAAGAAGCCCCAGAAGCCAATCCCCCGGCCTCAG
Seq A exon
AACAAGATCCAAGGCATGGTGTACGACTTCGTGACAAAGCAGGTGTTTGACATCTCTATCATGATCCTCATCTGCCTCAACATGGTGACGATGATGGTGGAGACGGATGACCAGAGCCAGCTCAAGGTGGACATCCTGTATAACATCAACATGGTCTTCATTATCGTCTTCACAGGGGAGTGTGTGCTCAAGATGTTTGCCCTGCGCCATTACTACTTCACCATTGGCTGGAATATCTTCGACTTCGTGGTTGTCATCTTGTCCATTGTGG
Seq C2 exon
GTCTCGCACTCTCTGACTTGATACAGAAATACTTTGTGTCACCCACACTGTTCCGTGTGATCCGATTGGCTCGGATCGGGCGTGTCTTGCGTCTGATCCGTGGGGCCAAGGGCATCCGGACGCTGCTGTTCGCCCTGATGATGTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTTCTCTTTCTGGTCATGTTCATTTACTCCATCTTCGGCATGTCTAACTTCGCCTACGTCAAGAAAGAGTCGGGCATCGACGACATGTTCAACTTTGAGACCTTTGGCAACAGTATCATCTGCCTCTTCGAGATCACCACGTCAGCTGGCTGGGACGGGCTTCTGAACCCCATCCTCAACAGTGGGCCCCCAGACTGTGACCCGACATTGGAGAACCCAGGCACCAATATCAAGGGTGACTGCGGCAACCCATCCATCGGCATCTGTTTCTTCTGCAGCTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTACATTGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001027-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=39.9),PF0061222=IQ=WD(100=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGCCCCAGAAGCCAAT
R:
TTGAACATGTCGTCGATGCCC
Band lengths:
299-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: