DreEX0064533 @ danRer10
Exon Skipping
Gene
ENSDARG00000034588 | scn4ab
Description
sodium channel, voltage-gated, type IV, alpha, b [Source:ZFIN;Acc:ZDB-GENE-051201-1]
Coordinates
chr3:22179531-22184461:+
Coord C1 exon
chr3:22179531-22179631
Coord A exon
chr3:22179756-22180026
Coord C2 exon
chr3:22183148-22184461
Length
271 bp
Sequences
Splice sites
3' ss Seq
GATATTTCTGATGTTTGAAGAAC
3' ss Score
3.54
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAGGAACCGATATCTTCATGACAGAAGAGCAGAAGAAATACTACAATGCCATGAAGAAACTTGGATCTAAAAAACCCCAAAAACCAATTCCAAGGCCCACG
Seq A exon
AACTGCTGCCAAGGTTTGGTCTTCGACTTTGTCACACAGCAGTTCTTCGATATTTTCATTATGGTGATGATCTGCCTGAACATGGTGACCATGATGGTGGAGACTGACGACCAAAGTGCTGAGATAGAGGAAATATTGTTCTATATCAATTTCGCCTTCATCATACTCTTCACCGGGGAGTGTGTTCTCAAGATCACTGCACTGCGCTACCACTACTTCTCCATTGGGTGGAACATTTTTGATTTTGTGGTGGTCATTCTTTCAATATTAG
Seq C2 exon
GTATTGGGCTGGCAGACCTTATTGAGAAGTACTTTGTGTCACCTACCCTGTTTCGTGTCATCCGATTGGCCAGAATTGGCCGCGTCCTGAGGCTCATTCGGGGTGCGAAGGGAATCAGAACATTACTGTTTGCGCTGATGATGTCACTTCCTGCCCTCTTCAACATTGGCCTCCTCCTGTTCCTAATCATGTTTATTTTCTCCATATTCGGCATGTCCAACTTTGCGTATGTGAAAAAAGAAGTCGGCATTGACGACATGATGAATTTCGAGACCTTCGGGAACAGTATCATATGCATGTTCATGATCACTACATCCGCTGGCTGGGATGGACTGTTGGCGCCTATTCTCAACTCCCCACCAGACTGCGATCCGGATGTGGATAACCCAGGTTCAACTACCCGAGGAAACTGTGGGAACGCGGCGGTGGGCATCGTGTTCTTCTGCAGCTACATTGTCATGTCCTTCCTCGTTGTGGTCAACATGTATATAGCCATTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034588-'25-27,'25-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.228
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.5=47.3)
C2:
PF0052026=Ion_trans=PD(79.0=40.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAAAACCAATTCCAAGGC
R:
TTCATCATGTCGTCAATGCCGA
Band lengths:
292-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]