RnoEX0078575 @ rn6
Exon Skipping
Gene
ENSRNOG00000012134 | Scn4a
Description
sodium voltage-gated channel alpha subunit 4 [Source:RGD Symbol;Acc:3636]
Coordinates
chr10:94505026-94510250:-
Coord C1 exon
chr10:94510146-94510250
Coord A exon
chr10:94508513-94508783
Coord C2 exon
chr10:94505026-94507268
Length
271 bp
Sequences
Splice sites
3' ss Seq
CATGTTCCGTGTCACTGCAGAAC
3' ss Score
9.36
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTTGGAGGGAAAGACATCTTCATGACAGAGGAACAGAAGAAATACTACAACGCGATGAAGAAGCTTGGCTCCAAGAAGCCCCAGAAGCCAATTCCCCGGCCTCAG
Seq A exon
AACAAGATCCAGGGCATGGTGTACGACTTCGTGACGAAGCAGGTGTTTGACATCTCCATCATGATCCTCATCTGCCTCAACATGGTTACTATGATGGTGGAGACAGATGACCAGAGCCAGCTCAAGGTGGACATCCTGTACAACATCAACATGGTCTTCATTATCATCTTCACAGGGGAGTGTGTGCTGAAGATGTTTGCCCTACGCCATTACTACTTCACCATTGGCTGGAACATCTTTGACTTTGTGGTTGTCATCTTGTCCATCGTGG
Seq C2 exon
GCCTTGCGCTCTCTGACTTGATACAGAAATACTTTGTGTCACCCACGCTGTTCCGTGTGATCCGCTTGGCTCGGATCGGGCGTGTCCTGCGTCTGATCCGCGGGGCCAAGGGCATCCGGACGCTGCTGTTCGCCCTGATGATGTCCCTGCCCGCCCTCTTCAACATCGGCCTCCTTCTCTTTCTGGTCATGTTCATCTACTCGATCTTCGGCATGTCTAACTTCGCCTACGTCAAGAAAGAGTCAGGCATCGACGACATGTTTAACTTTGAGACCTTTGGCAACAGTATCATCTGCCTCTTCGAGATCACCACGTCAGCCGGCTGGGACGGGCTTCTGAACCCCATCCTCAACAGTGGGCCCCCAGACTGTGACCCGACGTTGGAGAACCCGGGTACCAATGTCAGGGGGGACTGCGGCAACCCTTCCATCGGCATCTGTTTCTTCTGCAGCTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTACATTGCTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012134-'33-29,'33-27,35-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=39.9),PF0061222=IQ=WD(100=5.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGCCCCAGAAGCCAAT
R:
AACATGTCGTCGATGCCTGAC
Band lengths:
296-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]