GgaEX7010930 @ galGal4
Exon Skipping
Gene
ENSGALG00000000252 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr27:1630447-1632752:-
Coord C1 exon
chr27:1632648-1632752
Coord A exon
chr27:1631780-1632050
Coord C2 exon
chr27:1630447-1631639
Length
271 bp
Sequences
Splice sites
3' ss Seq
CACCATCACCCCTATGACAGAAC
3' ss Score
4.62
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TTTGGAGGCAAAGACATCTTCATGACAGAAGAGCAGAAGAAATACTATAATGCCATGAAGAAGCTCGGCTCCAAGAAACCCCAGAAGCCCATCCCCAGGCCCTCG
Seq A exon
AACAAGTTTCAAGGGATGGTGTTTGACTTTGTTACCAAGCAAGTGTTTGACATAACCATCATGATCCTGATTTGTCTTAACATGGTGACCATGATGGTCGAAACAGACGATCAAAGCGAGACCAAAACAGACATCCTCTACAAAATCAACCTGATCTTCATCGTCATCTTCACTGGAGAGTGTGTGCTAAAGATGTTTGCCTTGCGCTACTACTACTTCACCATTGGCTGGAACATCTTTGACTTTGTGGTGGTCATCCTCTCCATCGCAG
Seq C2 exon
GTATTGTCCTCTCAGACATCATAGAGAAGTACTTCGTGTCACCCACACTCTTCAGGGTCATCAGGCTGGCGAGGATCGGCCGCGTCCTCCGGCTGATCCGAGGAGCGAAAGGCATCCGGACTCTGCTCTTCGCTCTCATGATGTCCCTCCCTGCCCTGTTCAACATCGGCCTCCTGCTCTTCCTCGTCATGTTCATCTACTCCATATTCGGGATGTCCAACTTCGCCTACGTAAAGAAGGAGGCGGGGATTGATGACATCTTCAACTTTGAGACTTTTGGGAACAGCATCATCTGCCTCTTCCAGATCACGACGTCGGCCGGATGGGATGGGCTGCTCAGCCCGATCCTAAACAGTGGTCCCCCCGACTGTGACCCCAACCTGGAGAACCCTGGCAGCTCAATAAAGGGCAACTGTGGCAATCCATCCATCGGCATCTTCTTCTTCTGCAGCTACATCATCATCTCCTTCCTCATCGTGGTCAATATGTACATTGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'27-29,'27-27,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=42.0),PF0061222=IQ=WD(100=5.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGAAACCCCAGAAGCC
R:
GATGTCATCAATCCCCGCCTC
Band lengths:
297-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]