BtaEX6089655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004770 | SCN4A
Description
sodium channel, voltage gated, type IV alpha subunit [Source:HGNC Symbol;Acc:HGNC:10591]
Coordinates
chr19:48794399-48797636:-
Coord C1 exon
chr19:48797532-48797636
Coord A exon
chr19:48796648-48796918
Coord C2 exon
chr19:48794399-48795624
Length
271 bp
Sequences
Splice sites
3' ss Seq
CACCCCCACCCCTGCTGCAGAAC
3' ss Score
7.48
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
TTTGGAGGGAAAGACATCTTCATGACAGAGGAACAGAAGAAATACTATAACGCCATGAAGAAGCTTGGCTCCAAGAAGCCTCAGAAGCCAATTCCCCGGCCCCAG
Seq A exon
AACAAGGTCCAGGGCATGGTGTACGACCTGGTGACCAAGCAGGCGTTCGACATCACCATCATGATCCTCATTTGCCTCAACATGGTCACCATGATGGTGGAGACGGACGACCAGAGCCAGCTCAAGGTGGACATCCTGTACAACATCAACATGGTCTTCATCATCATCTTCACGGGCGAGTGCGTGCTCAAGATGCTGGCCCTGCGCCAGTACTACTTCACCGTCGGCTGGAATATCTTCGACTTTGTGGTCGTCATCCTGTCCATTGTGG
Seq C2 exon
GCCTGGCGCTCTCCGACCTGATCCAGAAATACTTCGTCTCACCCACGCTGTTCCGTGTGATCCGCCTGGCGAGGATCGGGCGGGTCCTGCGGCTGATCCGCGGGGCCAAGGGCATCCGGACGCTGCTCTTCGCGCTCATGATGTCGCTGCCCGCCCTCTTCAACATCGGCCTCCTCCTCTTCCTGGTCATGTTCATCTACTCCATCTTCGGCATGTCCAACTTCGCCTACGTCAAGAAGGAGTCGGGCATCGACGACATGTTTAACTTCGAGACCTTTGGCAACAGCATCATCTGCCTCTTTGAGATCACCACGTCGGCCGGCTGGGATGGGCTCCTCAACCCCATCCTCAACAGCGGGCCCCCTGACTGTGACCCCAACCTGGAGAACCCGGGCACCAGCATCCGGGGCGACTGTGGCAACCCCTCCATCGGCATCTGCTTCTTCTGCAGCTACATCATCATTTCCTTCCTCATCGTGGTCAACATGTACATCGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004770-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.260
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.4=47.3)
C2:
PF0052026=Ion_trans=PD(79.1=40.8),PF0061222=IQ=WD(100=5.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAAGAAGCCTCAGAAGC
R:
TAAACATGTCGTCGATGCCCG
Band lengths:
302-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]