RnoEX6017210 @ rn6
Exon Skipping
Gene
ENSRNOG00000029342 | Scn7a
Description
sodium voltage-gated channel alpha subunit 7 [Source:RGD Symbol;Acc:61922]
Coordinates
chr3:52777214-52782396:-
Coord C1 exon
chr3:52782292-52782396
Coord A exon
chr3:52781479-52781749
Coord C2 exon
chr3:52777214-52778283
Length
271 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTGCTTCCCTTACAGAAC
3' ss Score
10.7
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAGGGAGGATCAAATATCTTTATAACGGTAAAGCAGAAGAAACAGTACCGGGCACTGAAGAAGCTCTTGTATGCAGACTCTCAGAAACCAGCAGCCCGCCCTAGA
Seq A exon
AACAAGTTCCAAGGCTTCATTTGTGACGTAGTAACACATCGTGTCTTTAATGTCATCATCATACTTCTTATCTGTTTCCAAGCAACAACCATTATGATACAAAATGATGAGCAGAGTCCACAAATTGAAACCGCTGTCTTCTGGATGAACTCCCTTTTTACCATGCTGTTCACTCTGGAATGCATACTGAAGCTCACCGCCTTCCGCTGCCACTATTTCACCAGCGCATGGAATGTTCATGACTTTATGGTGGTCGTTTTCTCCATTACAG
Seq C2 exon
ACCAAGGACTGCTGCTGCCTTTGTCAATAGGACAATACTTTGTGCCTCCTTCACTGGTGCAGCTGCTTCTTCTCTCTCGCATCATCCATGTCCTGCGTCCTGGGAAAGGACCAAAGGTGTTCCATGATCTGATGCTTCCCTTGATGCTGTCACTCCCAGCACTGCTCAACATTGCTCTTCTCATCTTCCTGGTCATGTTCATCTACGCCATCTTTGGAATGTACAACTTCGCCTACGTAAAGAAAGAAGCCGGAATTAATGATGTGTCCAACTTTGAGACCTTTGGAAGCAGTATGCTTTGTCTCTTTCAAGTTACAACATTTTCTGGTTGGGACGGGATGCTGGATGCAATTTTCAACAGTCAGTGGTCTGACTGCGATCCTGATAAAATTAACCCAGGGACTCAGGTCAGGGGAGACTGTGGGAGCCCTTCTGTTGGGATTTTTTATTTTGTCAGTTACATCCTCATATCATGGTTGATCATTGTTAATATGTACGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029342-'35-45,'35-43,36-45=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(20.2=47.3)
C2:
PF0052026=Ion_trans=PD(79.3=47.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTACCGGGCACTGAAGAAG
R:
ACGTAGGCGAAGTTGTACATTCC
Band lengths:
301-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]