BtaEX6009406 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038180 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr2:31054197-31067407:-
Coord C1 exon
chr2:31067090-31067407
Coord A exon
chr2:31066082-31066200
Coord C2 exon
chr2:31054197-31054286
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTCTTTTTCAGACA
3' ss Score
12.31
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
CACTTTCTTATGCAAGGAGCTAAACAGTGATTAAAGAAGCAGGATGAAAAGATGGCACAGTCAGTGCTGGTACCGCCAGGACCTGACAGCTTCCGCTTCTTTACCAGGGAATCCCTTGCTGCTATTGAACAACGCATTGCAGAAGAGAAAGCTAAGAGACCCAAACAAGAGCGCAAGGATGAGGATGATGAAAGTGGCCCAAAGCCAAATAGTGACTTGGAAGCAGGAAAATCCCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGAGCCGCTGGAGGATCTGGATCCCTATTATATCAATAAGAAA
Seq A exon
ACATTTATAGTATTGAATAAAGGGAAAGCAATCTCTCGATTCAGTGCCACCCCTGCCCTGTACATTTTAACTCCCTTCAACCCTATTAGAAAATTAGCTATTAAGATTTTGGTACATTC
Seq C2 exon
TTTATTCAATGTGCTCATTATGTGCACTATTCTTACCAACTGTGTATTTATGACCATGAGTAACCCTCCAGACTGGACAAAGAATGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038180-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.7=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGAGCGCAAGGATGAGG
R:
CCACATTCTTTGTCCAGTCTGGA
Band lengths:
244-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]