BtaEX6009509 @ bosTau6
Exon Skipping
Description
Bos taurus dipeptidyl-peptidase 4 (DPP4), mRNA. [Source:RefSeq mRNA;Acc:NM_174039]
Coordinates
chr2:34527921-34530236:-
Coord C1 exon
chr2:34530183-34530236
Coord A exon
chr2:34529681-34529802
Coord C2 exon
chr2:34527921-34527968
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTCCACCATTGGTTTTACAGAAT
3' ss Score
7.34
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATACTACATTAGCAATGAATATAAAGGAATGCCAGGTGCAAGAAATCTTTATAA
Seq A exon
AATCCAACTTAATGACTACACAAAAGTGACGTGCCTCAGCTGTGAGCTGAATCCAGACAGGTGTCAGTATTACTCTGTATCGTTCAGTCAAGAGGCAAAGTACTATCAGCTGAGATGTTCCG
Seq C2 exon
GTCCCGGTCTGCCCCTCTATACTCTGCATAACAGCAACAATGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048246-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(6.5=100)
A:
PF0093016=DPPIV_N=FE(14.7=100)
C2:
PF0093016=DPPIV_N=PD(1.8=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]