MmuEX6101604 @ mm10
Exon Skipping
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62356960-62359330:-
Coord C1 exon
chr2:62359277-62359330
Coord A exon
chr2:62358784-62358905
Coord C2 exon
chr2:62356960-62357007
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGTTGGCTTTACAGAAT
3' ss Score
8.27
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATACTACATTAGTAACCAATATAAAGAAATGCCAGGAGGAAGAAATCTCTATAA
Seq A exon
AATTCAACTTACTGACCACACAAATGTGAAGTGCCTTAGTTGTGACCTGAATCCAGAAAGATGTCAGTATTATGCGGTATCATTTAGTAAAGAGGCAAAGTACTATCAGCTGGGATGTTGGG
Seq C2 exon
GCCCCGGTCTGCCCCTCTACACTCTACATCGTAGCACGGATCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-'31-24,'31-20,32-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.8=100)
A:
PF0093016=DPPIV_N=FE(11.0=100)
C2:
PF0093016=DPPIV_N=PD(1.3=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACCAATATAAAGAAATGCCAGGA
R:
CTTTATGATCCGTGCTACGATGT
Band lengths:
91-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types