HsaEX6016256 @ hg38
Exon Skipping
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]
Coordinates
chr2:162017108-162019276:-
Coord C1 exon
chr2:162019223-162019276
Coord A exon
chr2:162018729-162018850
Coord C2 exon
chr2:162017108-162017155
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTCCACCGTTGGTTTTACAGAAT
3' ss Score
9.12
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATACTACATTAGTAATGAATATAAAGGAATGCCAGGAGGAAGGAATCTTTATAA
Seq A exon
AATCCAACTTAGTGACTATACAAAAGTGACATGCCTCAGTTGTGAGCTGAATCCGGAAAGGTGTCAGTACTATTCTGTGTCATTCAGTAAAGAGGCGAAGTATTATCAGCTGAGATGTTCCG
Seq C2 exon
GTCCTGGTCTGCCCCTCTATACTCTACACAGCAGCGTGAATGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635-'33-30,'33-28,34-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.8=100)
A:
PF0093016=DPPIV_N=FE(11.0=100)
C2:
PF0093016=DPPIV_N=PD(1.3=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAATGAATATAAAGGAATGCCAGG
R:
TTATCATTCACGCTGCTGTGT
Band lengths:
90-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains