GgaEX0016643 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20657812-20659535:+
Coord C1 exon
chr7:20657812-20657865
Coord A exon
chr7:20658326-20658450
Coord C2 exon
chr7:20659488-20659535
Length
125 bp
Sequences
Splice sites
3' ss Seq
GAAGCTCATCTACTTTGCAGAAT
3' ss Score
5.05
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTACTATATTAGTAATCAAAATGGTGAGATGCCAGGTGGAAGAAATCTTTACAA
Seq A exon
AATGCTCTTGGAAAGCAGTCCAAAATCTACTCAGTGTGTTAGCTGTGATTTGAATCAAGAAAGATGCCAGTATTATTCTGCTTCCTTCAGCAAAGATGCACAATATTATCAGCTAAATTGTCTTG
Seq C2 exon
GTCCTGGCCTGCCTATGTCTACTCTGCACAGAAGTAGTGATGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110-'16-28,'16-27,17-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCAAAATGGTGAGATGCCAGGT
R:
CTTGATCATCACTACTTCTGTGCAGA
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]