DreEX6097905 @ danRer10
Exon Skipping
Gene
ENSDARG00000079420 | dpp4
Description
dipeptidyl-peptidase 4 [Source:ZFIN;Acc:ZDB-GENE-081104-277]
Coordinates
chr22:11608031-11608440:-
Coord C1 exon
chr22:11608387-11608440
Coord A exon
chr22:11608178-11608305
Coord C2 exon
chr22:11608031-11608072
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACTGTATTTTTTTCTGCAGAAT
3' ss Score
10.06
5' ss Seq
CCGGTCCGC
5' ss Score
2.36
Exon sequences
Seq C1 exon
ATACTTTGTGAGTAATGAACATAATGAGAGTCCGGGCCAGAGGAACGTTTACAA
Seq A exon
AATCACCATAAACGGCGCTTCTCATTCAGACAGAGAGTGTCTGACCTGTACACTAAATGCAGATCGCTGCAAATATAATTCTGCCACGTTTAGCACTGAAGGAAGCTACTACCTCATGAGCTGTTCCG
Seq C2 exon
GGCCTGGACTGCCTTTGTATACACTGAGAAACAGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079420-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(5.0=100)
A:
PF0093016=DPPIV_N=FE(11.9=100)
C2:
PF0093016=DPPIV_N=PD(1.4=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGTAATGAACATAATGAGAGTC
R:
CTGCTTGGCTGTTTCTCAGTG
Band lengths:
90-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]