MmuEX0018609 @ mm10
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62524193-62530761:-
Coord C1 exon
chr2:62530708-62530761
Coord A exon
chr2:62528655-62528779
Coord C2 exon
chr2:62524193-62524240
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCATTTCCCTCTAGAAT
3' ss Score
10.45
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTTTATTCTAGCAATGAATTTGAAGGTTACCCTGGAAGAAGAAACATCTACAG
Seq A exon
AATTAGCATTGGAAACTCTCCTCCGAGCAAGAAGTGTGTTACTTGCCATCTAAGGAAAGAAAGGTGCCAATATTACACAGCAAGTTTCAGCTACAAAGCCAAGTACTATGCACTCGTCTGCTATG
Seq C2 exon
GCCCTGGCCTCCCCATTTCCACCCTCCATGATGGCCGCACAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAATTTGAAGGTTACCCTGG
R:
CTTGGTCTGTGCGGCCATC
Band lengths:
91-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types