BtaEX6009478 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008140 | FAP
Description
Bos taurus fibroblast activation protein, alpha (FAP), mRNA. [Source:RefSeq mRNA;Acc:NM_001098001]
Coordinates
chr2:34345411-34352126:+
Coord C1 exon
chr2:34345411-34345464
Coord A exon
chr2:34347182-34347306
Coord C2 exon
chr2:34352079-34352126
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCATTTCCCTCCAGAAT
3' ss Score
10.31
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GTTTTATTCTAGCAATGAATTTGAAGGCTACCCTGGAAGAAGAAATATCTATAG
Seq A exon
AATTAGCATTGGAAGCCATTCTCCAAGCAAGAAGTGCATTACTTGCCATCTAAGGAAAAAAAGGTGCCAATATTACACAGCAAGTTTCAGCGACTATGCCAAGTACTACGCACTCGTCTGCTATG
Seq C2 exon
GCCCAGGCCTCCCCATTTCCACCCTTCATGATGGCCGCACCGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008140-'18-19,'18-16,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCAATGAATTTGAAGGCTACCC
R:
GTCGGTGCGGCCATCATG
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]