GgaEX6042570 @ galGal4
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
seprase [Source:RefSeq peptide;Acc:NP_001180568]
Coordinates
chr7:20596655-20598384:+
Coord C1 exon
chr7:20596655-20596708
Coord A exon
chr7:20597024-20597148
Coord C2 exon
chr7:20598337-20598384
Length
125 bp
Sequences
Splice sites
3' ss Seq
GTATTTTATTTTTCTCCTAGAAT
3' ss Score
7.86
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
TTTCTACTCAAGCAATGAATTTGAAGGCTATCCAGGAAGAAGAAATATTTACAA
Seq A exon
AATTAGTATTGGAAGTAAGCCTATCAGAAAACTATGCATTACTTGCAATTTACGGAAAGAGAGATGCCAGTATTATACAGCGAGGTTCAGTGAACGCTCTAAGTATTATGCCTTGATCTGTTATG
Seq C2 exon
GTCCCGGGATTCCTATTTCTACTCTTTTTGAGAATGAGAGTGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'16-23,'16-22,17-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAGCAATGAATTTGAAGGCT
R:
TCACTCTCATTCTCAAAAAGAGTAGA
Band lengths:
92-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]