HsaEX6016276 @ hg19
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein, alpha [Source:HGNC Symbol;Acc:3590]
Coordinates
chr2:163051211-163057129:-
Coord C1 exon
chr2:163057076-163057129
Coord A exon
chr2:163055267-163055391
Coord C2 exon
chr2:163051211-163051258
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCATTTCCCTCTAGAAT
3' ss Score
10.45
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTTTTATTCTAGCAATGAATTTGAAGAATACCCTGGAAGAAGAAACATCTACAG
Seq A exon
AATTAGCATTGGAAGCTATCCTCCAAGCAAGAAGTGTGTTACTTGCCATCTAAGGAAAGAAAGGTGCCAATATTACACAGCAAGTTTCAGCGACTACGCCAAGTACTATGCACTTGTCTGCTACG
Seq C2 exon
GCCCAGGCATCCCCATTTCCACCCTTCATGATGGACGCACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-'26-33,'26-27,27-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATGAATTTGAAGAATACCCTGG
R:
TGATCAGTGCGTCCATCATGA
Band lengths:
90-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)