RnoEX0034887 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48490543-48496299:-
Coord C1 exon
chr3:48496246-48496299
Coord A exon
chr3:48494427-48494551
Coord C2 exon
chr3:48490543-48490590
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCATTCCCCTCTAGAAT
3' ss Score
10.13
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTTTTATTCTAGCAATGAATTTGAAGGTTACCCTGGAAGAAGAAACATCTACAG
Seq A exon
AATTAGCATTGGAAACTCTCCTCCGAGTAAGAAGTGTGTTACTTGCCATCTAAGGAAAGAAAGGTGCCAATATTACACAGCAAGTTTCAGCTACAAAGCCAAATACTATGCACTCATCTGCTACG
Seq C2 exon
GCCCTGGCCTCCCGATTTCCACCCTCCATGATGGCCGCACAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'19-16,'19-15,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
PF0093016=DPPIV_N=FE(11.4=100)
C2:
PF0093016=DPPIV_N=PD(1.4=29.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAATTTGAAGGTTACCCTGG
R:
CTTGGTCTGTGCGGCCATC
Band lengths:
91-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]