DreEX6038686 @ danRer10
Exon Skipping
Gene
ENSDARG00000078468 | fap
Description
fibroblast activation protein, alpha [Source:ZFIN;Acc:ZDB-GENE-081104-439]
Coordinates
chr9:51717993-51719688:+
Coord C1 exon
chr9:51717993-51718046
Coord A exon
chr9:51719394-51719521
Coord C2 exon
chr9:51719638-51719688
Length
128 bp
Sequences
Splice sites
3' ss Seq
CATATGTCTGTGTTTGCTAGGAT
3' ss Score
7.93
5' ss Seq
ATGGTTAGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ATATTATGTGAGTAATGAACACATGGCAAGACCTGGACAGAGAAACCTTTACAA
Seq A exon
GATTTCTATCAGCAGCAGTGGACATTCTGCTCCCAAGTGCTTGACCTGTGCGCTGTATGAGGACAGGTGTCAGTATAACTCTGCTTACTTCAGCCTGAACGCCTCGTACTTCCGGATGGACTGCTATG
Seq C2 exon
GACCAGGACTTCCGCTGTTTACAATGATGGACAACCGAGGGCCGGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078468-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(5.0=100)
A:
PF0093016=DPPIV_N=FE(11.9=100)
C2:
PF0093016=DPPIV_N=PD(1.4=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGTAATGAACACATGGCA
R:
GCCCTCGGTTGTCCATCATTG
Band lengths:
90-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]