RnoEX0029635 @ rn6
Exon Skipping
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48317337-48319442:-
Coord C1 exon
chr3:48319389-48319442
Coord A exon
chr3:48318868-48318989
Coord C2 exon
chr3:48317337-48317384
Length
122 bp
Sequences
Splice sites
3' ss Seq
CACCACTGTTGGCTTTACAGAAT
3' ss Score
7.6
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTACTACATTAGTAATGAATATAAAGAAATGCCAGGAGGAAGAAATCTTTATAA
Seq A exon
AATTCAGCTTACTGACCACACAAATAAGAAGTGCCTTAGTTGTGACCTGAATCCAGAAAGATGCCAGTATTACTCGGTGTCACTTAGTAAAGAGGCAAAGTACTATCAGCTGGGATGCCGGG
Seq C2 exon
GCCCTGGTCTGCCCCTCTACACTCTGCATCGCAGCACTGATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763-'19-23,'19-21,20-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.8=100)
A:
PF0093016=DPPIV_N=FE(10.9=100)
C2:
PF0093016=DPPIV_N=PD(1.3=29.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATATAAAGAAATGCCAGGAGGA
R:
TTTGATCAGTGCTGCGATGCA
Band lengths:
84-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]