BtaEX6009512 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34742281-34792607:-
Coord C1 exon
chr2:34792526-34792607
Coord A exon
chr2:34757265-34757411
Coord C2 exon
chr2:34742281-34742419
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTATTTACTTCTGATAAAGGTC
3' ss Score
4.73
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
Seq A exon
GTCATCGGACACTATTTATTGGCGTTCATGTGCCCCTGGGAGGAAGAAAAAGCCATCGACGTCACAGGCATCGTGGTCATAAACACAGAAAGAGAGACAGAGAGAGAGATTCAGGACTAGAGGATGGAAGGGAGTCACCTTCCTTTG
Seq C2 exon
ACACCCCATCACAGCGAGTACAGTTTATTCTTGGGACTGAGGATGATGATGAGGAGCACATTCCTCATGACCTCTTCACAGAACTCGATGAGATTTGCTGGCGTGAAGGTGAGGATGCTGAGTGGCGAGAAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.680 C2=0.319
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAAGAAGCAGTTGTGGA
R:
CTGGCTGTTTCTCGCCACTC
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]