RnoEX0082781 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48106099-48156278:+
Coord C1 exon
chr3:48106099-48106180
Coord A exon
chr3:48130706-48130852
Coord C2 exon
chr3:48156140-48156278
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCATTTATTTTGAATGAAGGTC
3' ss Score
2.87
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
AGAAATGATGAAGAAGCCGTTGTGGATAGAGGTGGAACACGTTCTATTCTCAAAACACATTTTGAAAAAGAAGATTTAGAAG
Seq A exon
GTCATCGAACATTATTTATTGGAGTTCATGTGCCGCTTGGTGGAAGAAAGAGCCATCGTCGTCACAGGCATCGAGGCCATAAGCACAGAAAGCGGGACAGAGAGAGAGATTCAGGACTAGAGGATGGAGGAGAGTCACCTTCTTTTG
Seq C2 exon
ATACCCCATCACAGAGGGTGCAGTTTATTCTTGGAACTGAGGACGATGATGAGGAGCACATTCCTCATGACCTTTTCACAGAACTGGATGAAATTTGCTGGCGTGAAGGGGAAGATGCCGAGTGGCGAGAAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'4-13,'4-11,7-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=0.680 C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAAGAAGCCGTTGTGGA
R:
CTGGCTGTTTCTCGCCACTC
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]