DreEX6038698 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51838742-51847346:-
Coord C1 exon
chr9:51847192-51847346
Coord A exon
chr9:51840832-51840975
Coord C2 exon
chr9:51838742-51838880
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTTTCTATTCATAGGTC
3' ss Score
10.5
5' ss Seq
ACAGTAAAT
5' ss Score
1.91
Exon sequences
Seq C1 exon
TATTCATTGCAGCCTGTCACTCTGATAGAGACCAACACACTGACACTCTCTCTCTCTCTCTCTCTCCATACAGAGGAATGATGATGAGGCCATCGTGGACAGAGGAGGAACCCGCTCCATGCTTAAAGCTGGATTTGAGAAGGAGGAGCTCGAAG
Seq A exon
GTCACAGGACTCTGTACATTGGTGTTCATGTTCCTCTGGGAAGAAGAACCCGCCGCCGCCATCGGCATCACGGACACCGACACAGAAAGCGGAGCAGAGAAAGAGACTCAGGAGTTGAGGATGGACGAGAATCGCCTTCATACA
Seq C2 exon
ACACTCCGTCTCAGAGGGTTCAGTTTCTGCTGGGCACTGAGGATGATGATGAAGAGCACATTCCGCATGACCTCTTCACTGAGCTGGATGAGATCTGTCTGCGTGAAGGGGAGGATGCCGAGTGGAGAGAAACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.673 C2=0.319
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCAGCCTGTCACTCTGA
R:
CGCAGACAGATCTCATCCAGC
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]