HsaEX6016240 @ hg19
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162627483-162696437:+
Coord C1 exon
chr2:162627483-162627564
Coord A exon
chr2:162660959-162661105
Coord C2 exon
chr2:162696299-162696437
Length
147 bp
Sequences
Splice sites
3' ss Seq
GGGTTTGCTTCCTTATGAAGGTC
3' ss Score
6.71
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
Seq A exon
GTCATCGAACACTATTTATTGGAGTACATGTGCCCTTGGGAGGAAGAAAAAGCCATCGACGTCACAGGCATCGTGGTCATAAACACAGAAAGAGAGACAGAGAAAGAGATTCAGGATTAGAGGATGGAAGGGAGTCACCTTCTTTTG
Seq C2 exon
ACACCCCATCACAGAGGGTACAGTTTATTCTTGGAACCGAGGATGATGACGAGGAACACATTCCTCATGACCTTTTCACAGAACTGGATGAGATTTGTTGGCGTGAAGGTGAGGACGCTGAGTGGCGAGAAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'8-15,'8-14,9-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.696 C2=0.319
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAAGAAGCAGTTGTGGA
R:
CTGGCTGTTTCTCGCCACTC
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)