GgaEX6042585 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20752236-20773616:-
Coord C1 exon
chr7:20773528-20773616
Coord A exon
chr7:20761562-20761708
Coord C2 exon
chr7:20752236-20752374
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTTTTTATTTATAGGTC
3' ss Score
10.01
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTTGCAGAGAAATGATGAGGAAGCTGTTGTGGATAGAGGTGGAACTCGCTCCATTCTCAAAACTCATTTTGAAAAGGAAGATCTAGAAG
Seq A exon
GTCATCGAACGTTGTTCATTGGTGTTCACGTGCCACTGGGTGGAAGAAAAAGTCACAGGCGCCATAGGCACCGTGGACATAAACACAGAAAAAGAGACAGGGAACGAGATTCAGGATTAGAAGATGGGAGAGAGTCTCCTCCTTTTG
Seq C2 exon
ATACTCCATCACAAAGGGTGCAGTTTATTCTTGGAACAGAAGATGATGATGAAGAACACATTCCTCATGATCTCTTTACTGAGCTTGATGAAATTTGTTGGCGTGAAGGAGAGGATGCTGAGTGGAGGGAGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.660 C2=0.319
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGAAATGATGAGGAAGCT
R:
CTTGCTGTCTCCCTCCACTCA
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]