GgaEX6042585 @ galGal3
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
NA
Coordinates
chr7:22836323-22859274:-
Coord C1 exon
chr7:22859193-22859274
Coord A exon
chr7:22847224-22847370
Coord C2 exon
chr7:22836323-22836461
Length
147 bp
Sequences
Splice sites
3' ss Seq
AACTCTTTTTTTATTTATAGGTC
3' ss Score
10.01
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGAAATGATGAGGAAGCTGTTGTGGATAGAGGTGGAACTCGCTCCATTCTCAAAACTCATTTTGAAAAGGAAGATCTAGAAG
Seq A exon
GTCATCGAACGTTGTTCATTGGCGTTCACGTGCCACTGGGTGGAAGAAAAAGTCACAGGCGCCATAGGCACCGTGGACATAAACACAGAAAAAGAGACAGGGAACGAGATTCAGGATTAGAAGATGGGAGAGAGTCTCCTCCTTTTG
Seq C2 exon
ATACTCCATCACAAAGGGTGCAGTTTATTCTTGGAACAGAAGATGATGATGAAGAACACATTCCTCATGATCTCTTTACTGAGCTTGATGAAATTTGTTGGCGTGAAGGAGAGGATGCTGAGTGGAGGGAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.700 C2=0.319
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATGAGGAAGCTGTTGTGGA
R:
CTGGCTGTCTCCCTCCACTC
Band lengths:
218-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]