BtaEX6009622 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37126777-37133630:+
Coord C1 exon
chr2:37126777-37126880
Coord A exon
chr2:37132798-37133108
Coord C2 exon
chr2:37133495-37133630
Length
311 bp
Sequences
Splice sites
3' ss Seq
ATTGTTCTTTTGATATATAGGGT
3' ss Score
6.28
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
AGAACTGGTCAATAGAAGAACAAGCAATGGAAATGGATTTGAATATTCTTCAACAGGTAGAAGATCTAGAAAGGAGAGTTGCATCAGCAAGTTTGCAAGTGAAG
Seq A exon
GGTTGGATGTGTCCAGAACCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCATTTTCTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGAAGAAGGCAGTGCACATGCACTGGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'60-64,'60-62,62-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.315 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGGTCAATAGAAGAACAAGCA
R:
ACTTTCATAATTGATTTTTCCCATGC
Band lengths:
239-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]