MmuEX6101479 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59903159-59911842:-
Coord C1 exon
chr2:59911682-59911842
Coord A exon
chr2:59907439-59907749
Coord C2 exon
chr2:59903159-59903305
Length
311 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTCTTGATGTATAGGGT
3' ss Score
5.28
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
TCGCTATTATTGAATTAAACGAAAATGAAGACAATCAGGTAACCCGCGATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGCGAGTTTGCAAGTGAAG
Seq A exon
GGTTGGATGTGTCCAGAGCCTGCATCGGAAAGGGAGGACTTGGTATATTTTGAACATAAGTCACTTACTAAGTTGTTCAAGGAGCATGATGGAGAACTTACTGGTGACGAAGAAAACAGTGCGCATGCACTGGCTCGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAGAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq C2 exon
TACTGCCAGATCTGTCGGAAGGGCGACAATGAAGAGCTGCTTCTACTCTGCGACGGCTGTGACAAAGGCTGCCACACCTACTGCCACAGGCCCAAGATTACAACTATCCCCGATGGGGACTGGTTTTGCCCAGCTTGCATCTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.312 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062824=PHD=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAACGAAAATGAAGACAATCAGGT
R:
TTTAGAGATGCAAGCTGGGCA
Band lengths:
294-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types