GgaEX6043397 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36059495-36061274:-
Coord C1 exon
chr7:36061114-36061274
Coord A exon
chr7:36060013-36060323
Coord C2 exon
chr7:36059495-36059630
Length
311 bp
Sequences
Splice sites
3' ss Seq
AAACCTTTCTATTAACATAGGGC
3' ss Score
5.9
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
TTGCAATTATTGATATCAATGAAAATGAAGATAACCAGGTAACTCGAGATGTTGTGGAAAACTGGTCAGTAGAAGAGCAAGCAATGGAGGTGGACCTTGCTATTCTTCAGCAGGTGGAAGACCTAGAGAGGAGAGTTGCATCAGCTAGTTTGCAAGTTAAG
Seq A exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCATTAGTGGTGATGGTGACGG
Seq C2 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'57-64,'57-63,60-64=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.279 C2=0.043
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATGAAAATGAAGATAACCAGGT
R:
AGATTTTTCCCATGCTATCGATTTCT
Band lengths:
271-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]