DreEX6020943 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11755179-11759375:+
Coord C1 exon
chr6:11755179-11755339
Coord A exon
chr6:11756193-11756494
Coord C2 exon
chr6:11759240-11759375
Length
302 bp
Sequences
Splice sites
3' ss Seq
TCTTTGATTTTATGTTTCAGGGC
3' ss Score
11.36
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TGGCAGTTATGGAGGTCTCAGAGCTCGACGAGGGCCAGGTTTCCGTGGAGACGCTGCAGGAGTGGTGCGTGGAGGAACAGGCCATGGAGACTGACATTGCTCTGCTGCAGCAGGTGGAGGAGCTGGAGCGCAAAGTCACGTCTGCCAGCCTGCAGGTCAAG
Seq A exon
GGCTGGACATACCCAGAGCCGCAGTCTGAGAGAGAGGACCTTGTCTATTTCGAGCACAAGCCCCTCCCCAAGCACCGCCCTGGGGCGGAGTCTCAGGAGGAGCGCAGCTCGGAGAAGGGTCTGATCCGGCGCCCCAGCAACCCGCTGGACATCGCTGTGATGCGGCTGGCAGAGCTGGAGCGCCACATCGAGAGAAGGTACCTGCGGAGCCCCTTAGGGACCACCATCCAGATCAAACTGGATAATGTGGGTACAGTCACTGTCCCCGCACCTGCTCCATCCACTAGCGCTGGAGGGGAAGG
Seq C2 exon
GGGAGAGGAAGAGATTGCTCCAGGAATGAAGCTCTGGCGGAAAGCTTTGAGTGAGGTGCGCAGCTCCTCTCAGCTGGCCATGTGTCTGCAGCAGCTGCAGAAGTCCATCGCCTGGGAAAAGTCTATCATGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'45-42,'45-41,48-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.519 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTTATGGAGGTCTCAGA
R:
TTTCATGATAGACTTTTCCCAGGCG
Band lengths:
294-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]