HsaEX6016167 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160193453-160204157:-
Coord C1 exon
chr2:160203997-160204157
Coord A exon
chr2:160193973-160194283
Coord C2 exon
chr2:160193453-160193588
Length
311 bp
Sequences
Splice sites
3' ss Seq
ACTATTCTCTTGATATATAGGGT
3' ss Score
6.05
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
Exon sequences
Seq C1 exon
TTGCTATTATTGAACTGAATGAAAATGAAGAAAACCAAGTAACTCGAGATATTGTGGAGAACTGGTCAGTAGAAGAACAAGCAATGGAAATGGATTTGAGTGTCCTTCAACAGGTAGAAGATCTAGAAAGGAGAGTTGCATCAGCAAGTTTGCAAGTGAAG
Seq A exon
GGTTGGATGTGTCCAGAGCCTGCATCAGAAAGGGAGGACTTGGTATATTTTGAACATAAATCATTTACTAAATTGTGCAAGGAGCATGATGGAGAATTTACTGGCGAAGACGAAAGCAGTGCACATGCACTAGAACGGAAGAGTGACAACCCCCTAGATATAGCTGTAACCAGGCTGGCTGATTTGGAGCGGAACATTGAAAGAAGGTATCTGAAGAGCCCCTTAAGTACCACCATTCAGATCAAACTGGATAATGTGGGCACAGTTACTGTCCCTGCTCCTGCACCATCCGTTAGTGGTGATGGTGACGG
Seq C2 exon
AATTGAAGAGGATATTGCTCCAGGGCTCAGGGTATGGAGAAGGGCATTATCAGAAGCTCGCAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAATTACAGAAATCAATAGCATGGGAAAAATCAATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'50-51,'50-50,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.223 C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGAATGAAAATGAAGAAAACC
R:
ACTTTCATAATTGATTTTTCCCATGC
Band lengths:
286-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)