GgaEX6043397 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38195832-38197611:-
Coord C1 exon
chr7:38197451-38197611
Coord A exon
chr7:38196455-38196660
Coord C2 exon
chr7:38195832-38195967
Length
206 bp
Sequences
Splice sites
3' ss Seq
AAACCTTTCTATTAACATAGGGC
3' ss Score
5.9
5' ss Seq
AAGGTATCT
5' ss Score
7.56
Exon sequences
Seq C1 exon
TTGCAATTATTGATATCAATGAAAATGAAGATAACCAGGTAACTCGAGATGTTGTGGAAAACTGGTCAGTAGAAGAGCAAGCAATGGAGGTGGACCTTGCTATTCTTCAGCAGGTGGAAGACCTAGAGAGGAGAGTTGCATCAGCTAGTTTGCAAGTTAAG
Seq A exon
GGCTGGCTGTGTCCTGAACCTGCATCAGAAAGAGAAGACTTGGTATATCATGAACATAAGTCAATTATTAGATTGCACAAGAAATACGATGGAGATAGTGCTGGAGGCGGAGAAGGCAGTACCAGCTCTCTAGAGCGGAAGAATGACAACCCTCTAGATATAGCTGTAACCAGACTTGCTGACTTGGAGCGGAACATAGAGCGAAG
Seq C2 exon
AACTGAAGAGGATATTGCTCCAGGGCTGAGGGTATGGAGAAAGGCGTTGTCAGAAGCACGAAGTGCTGCACAGGTAGCTCTGTGCATTCAGCAGTTACAGAAATCGATAGCATGGGAAAAATCTATTATGAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'43-49,'43-48,44-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.260 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATGAAAATGAAGATAACCAGGT
R:
TTTTTCCCATGCTATCGATTTCTGT
Band lengths:
268-474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]