BtaEX6009642 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37024977-37037758:+
Coord C1 exon
chr2:37024977-37025144
Coord A exon
chr2:37026059-37026252
Coord C2 exon
chr2:37037558-37037758
Length
194 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTTAACTTTCAAGGTG
3' ss Score
7.95
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGCAGAATGGTGGCGAACAACAGATGTTCATACACGTGCAGGGGCAGCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCTGGAAAAAGTAATCGAAATGGTCCTGAAAAAG
Seq A exon
GTGTAAATGGATCAATAAATGGAAACAGTACATCATCTGTATCTGGTATCAACACATCTGTACTGTCCACTACTGCTTCAAGTTCTGTGGGACAAACGAAAAGTGTAAGCTCAGGTGGAGGAAATAGAAAATGTAATCAGGAACAAAACAAAACCCAGCCTTTGGATGCTAGAGCTGACAAAATCAAAGATAAG
Seq C2 exon
AAGCCAAGGAAAAAAGCTATGGAAAGTTCTAGCAACAGTGATAGTGATTCAGGCACATCATCAGACACGTCAAGTGAAGGCATTAGTAGTAGTGATTCGGATGACCTAGAGGAAGATGAAGAAGAAGATCAAAGTATTGAAGAAAGTGAAGATGATGATTCTGATTCAGAGACTGAAGCACAGCAGAAAAGTAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0334410=Daxx=PU(7.8=41.5)
C2:
PF0334410=Daxx=FE(19.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAATGGTGGCGAACAAC
R:
TGCCTTCACTTGACGTGTCTG
Band lengths:
249-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]