RnoEX6016955 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46037330-46046211:-
Coord C1 exon
chr3:46046047-46046211
Coord A exon
chr3:46044979-46045170
Coord C2 exon
chr3:46037330-46037532
Length
192 bp
Sequences
Splice sites
3' ss Seq
TAAACCTGTTTATTTTTAAGGTA
3' ss Score
9.39
5' ss Seq
ATACACCGC
5' ss Score
-26.29
Exon sequences
Seq C1 exon
GTGCAGAGTGGTGGCGAACCACAGATGGTCACTCTCGTGCAGGAACGCCCTTCTTTCCTCCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCAAGGACTTCTGGGAAGAGCAATCGAAATGGTCCCGAAAAAG
Seq A exon
GTATAAATGGGTCAGTTAATGGAAACAGTGCAGCATCTGTACATGGTGTCAATACATCTGGACTGTCCACTCCTGCTTCAAGTTCCATGGGACAGAATCAAAGCACAAGCTCAGGTGGAGGAAACCTAAAATGTCATCAGGAACAAAACAAAAGCCAGCCTGTGGATGCCAGAGCCGACAAAATCAAAGATA
Seq C2 exon
AGAAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTCAGGCACATCGTCAGACACCTCGAGTGAAGGCATTAGCAGCAGTGACTCTGACGATCTGGAAGAGGAAGAGGAGGAAGATCAAAGTATTGAGGAGAGTGAAGACGATGATTCTGACTCAGAGACTGAAGCACAACACAAAAGTAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'15-16,'15-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF041477=Nop14=PU(20.2=52.3),PF0334410=Daxx=PU(10.6=36.9)
C2:
PF041477=Nop14=FE(39.9=100),PF0334410=Daxx=FE(29.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGATGGTCACTCTCGTGC
R:
GATCGTCAGAGTCACTGCTGC
Band lengths:
254-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]