HsaEX6016147 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160295520-160304920:-
Coord C1 exon
chr2:160304753-160304920
Coord A exon
chr2:160303293-160303486
Coord C2 exon
chr2:160295520-160295723
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTTTATTTTCAAGGTG
3' ss Score
10.21
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGCAGAATGGTGGCGAACAACTGATGCTCATACTCGTACAGGAGCAACCTTCTTTCCACCATTACTGGGAATTCCACCACTATTTGCTCCCCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCGGGAAAAAGTAATCGAAATGGTCCCGAAAAAG
Seq A exon
GTGTAAATGGGTCAATAAATGGAAGTAATACATCATCTGTAATTGGTATCAACACATCTGTACTATCCACTACTGCTTCAAGTTCCATGGGACAAACTAAAAGTACAAGCTCAGGTGGAGGAAATCGAAAATGTAATCAGGAACAAAGCAAAAACCAGCCTTTGGATGCTAGAGTTGACAAAATCAAAGATAAG
Seq C2 exon
AAACCAAGGAAGAAAGCAATGGAAAGTTCTAGCAACAGTGATAGTGATTCAGGCACATCATCAGACACCTCAAGTGAAGGCATTAGTAGCAGTGATTCAGATGATCTAGAAGAAGATGAAGAAGAAGAAGATCAAAGTATTGAAGAAAGTGAAGATGATGATTCTGATTCAGAGAGTGAAGCACAACATAAAAGTAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATGGTGGCGAACAACT
R:
TGCCTTCACTTGAGGTGTCTG
Band lengths:
248-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)