Special

MmuEX0007721 @ mm9

Exon Skipping

Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59807275-59816764:-
Coord C1 exon
chr2:59816600-59816764
Coord A exon
chr2:59815416-59815609
Coord C2 exon
chr2:59807275-59807475
Length
194 bp
Sequences
Splice sites
3' ss Seq
TAAAACTGTTTATTTTCAAGGTA
3' ss Score
8.41
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGCAGAGTGGTGGCGAACCACAGATGGCCACTCTCGTGCTGGAACGCCCTTCTTTCCACCATTACTGGGAATTCCACCACTGTTTGCTCCTCCAGCCCAGAATCACGATTCGTCATTCCATTCGAGGACTTCTGGGAAGAGCAGTCGAAATGGTCCTGAGAAAG
Seq A exon
GTATAAATGGGTCGGTTAATGGAACCAGTGCAGCATCAGTACTTGGTGTCAATGCATCTGTAGTAGCCACTCCTGCTTCAAGTTCCATGGGACAGAACCAAAGCACAAGCTCAGGTGGAGGAACCCTAAAATGTCATCAGGAACAAAACAAAAGCCAGCCTGTGGACGCCAGAGCCGACAGAATCAAAGATAAG
Seq C2 exon
AAACCAAGGAAGAAGGCTATGGAAAGTTCTAGCAACAGTGATAGTGACTCAGGCACATCGTCAGACACCTCGAGTGAAGGCATTAGCAGCAGTGACTCAGACGATCTGGAAGAGGAAGAGGAAGAAGATCAAAGCGTGGAGGAGAGTGAAGATGACGATTCTGACTCAGAGACTGAAGCACAACACAAAAGTAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987_MULTIEX2-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.912 A=1.000 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF0334410=Daxx=PU(6.4=33.8)

							
C2:
PF0334410=Daxx=FE(19.2=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000108172





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000088443, ENSMUSP00000108167, ENSMUSP00000108169
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:159446782-159446975 
HIGH PSI
HsaEX6016147
(BAZ2B)
Human
(hg19)
chr2:160303293-160303486 
HIGH PSI
HsaEX6016147
(BAZ2B)
Rat
(rn6)
chr3:46044979-46045170 
HIGH PSI
RnoEX6016955
(Baz2b)
Cow
(bosTau6)
chr2:37026059-37026252 
HIGH PSI
BtaEX6009642
(BAZ2B)
Chicken
(galGal4)
chr7:36102441-36102634 
HIGH PSI
GgaEX6043390
(BAZ2B)
Chicken
(galGal3)
chr7:38239304-38239497 
HIGH PSI
GgaEX6043390
(BAZ2B)
Zebrafish
(danRer10)
chr6:11704408-11704613 
HIGH PSI
DreEX0016654
(baz2ba)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CACCACTGTTTGCTCCTCCAG

				
R: 
TCTTCACTCTCCTCCACGCTT

				
Band lengths: 
242-436

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"