GgaEX6043390 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38237603-38240746:-
Coord C1 exon
chr7:38240585-38240746
Coord A exon
chr7:38239304-38239497
Coord C2 exon
chr7:38237603-38237809
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTAAAATCTGTCATCTTTAGGTA
3' ss Score
8.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGGTGGCGAACAGCGGACTCTCACTCTCGTTCTGGGGCAGCTTTTTTCCCACCACTCTTGGGCATCTCACCGCTCTTTGCACCTCCTGCCCAAAACCATGATTCTACTCCATTCCACCCAAGAACTACAGGAAAAAATAATCGTGGCAGTTTAGAAAAAG
Seq A exon
GTATAAATGGATCACTGAATGGGAACAGTACCACTGCAGCATCTGCTATCAGCACATCTGTACTGTCCACTAGTATTGCAACATCCGCAGGGCAAGTGAAAGTGGTAACCTCAGGAGCAGGAGGCCGCAAATACAACCAGGAGCAAAACAAAGTTCAGCTTTTGGACACCAGAGCTGACAAAATTAAAGACAAG
Seq C2 exon
AAACCCAGAAAAAAAGCAGTAGAAAGCTCCAGTAACAGTGACAGTGACTCAGGCTCCTCGTCAGACACATCGAGTGAAGGCATAAGCAGCAGTGATTCTGATGACCTAGAGGAGGATGAAGAGGAGGAGGAGGACCAGAGTGCTGAAGAGAGTGAAGATGATGAATCTGATTCTGAAAATGAAGCACATCACGAAAAGAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'4-10,'4-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.959 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0334410=Daxx=PU(7.3=36.9)
C2:
PF0334410=Daxx=FE(20.6=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCGGACTCTCACTCTCG
R:
TGCTGCTTATGCCTTCACTCG
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]