HsaEX6016147 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159439009-159448403:-
Coord C1 exon
chr2:159448242-159448403
Coord A exon
chr2:159446782-159446975
Coord C2 exon
chr2:159439009-159439212
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTTTATTTTCAAGGTG
3' ss Score
10.21
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AATGGTGGCGAACAACTGATGCTCATACTCGTACAGGAGCAACCTTCTTTCCACCATTACTGGGAATTCCACCACTATTTGCTCCCCCAGCCCAGAATCATGATTCTTCTTCATTCCATTCAAGGACTTCGGGAAAAAGTAATCGAAATGGTCCCGAAAAAG
Seq A exon
GTGTAAATGGGTCAATAAATGGAAGTAATACATCATCTGTAATTGGTATCAACACATCTGTACTATCCACTACTGCTTCAAGTTCCATGGGACAAACTAAAAGTACAAGCTCAGGTGGAGGAAATCGAAAATGTAATCAGGAACAAAGCAAAAACCAGCCTTTGGATGCTAGAGTTGACAAAATCAAAGATAAG
Seq C2 exon
AAACCAAGGAAGAAAGCAATGGAAAGTTCTAGCAACAGTGATAGTGATTCAGGCACATCATCAGACACCTCAAGTGAAGGCATTAGTAGCAGTGATTCAGATGATCTAGAAGAAGATGAAGAAGAAGAAGATCAAAGTATTGAAGAAAGTGAAGATGATGATTCTGATTCAGAGAGTGAAGCACAACATAAAAGTAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'41-34,'41-31,44-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=0.992 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGGCGAACAACTGATGC
R:
TGCCTTCACTTGAGGTGTCTG
Band lengths:
243-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains